Single miRNA

Cti-MIR172b

Basic info.

miRNA locus ID
Cti-MIR172b

miRNA locus accession
PmiREN003330

Organism
Carthamus tinctorius

Genomic location
Cti-LUCG01250337.1 3910 4125 -

Comments
A member of family MIR172

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  AAC      TTT      A    T              A    AAA       TTTT    GTTTTCATGGAGGTTTCTTGAATCTTTTTCAAGAAAAAAAAAGGGAT
     AGTCGG   TTGCTG TGCA CATCATCAAGATTC CAAA   ATCAAAC    ACGG                                               
     ||||||   |||||| |||| |||||||||||||| ||||   |||||||    ||||                                                
     TCAGTT   AACGGC ACGT GTAGTAGTTCTAAG GTTT   TAGTTTG    AGGT                                               
TTTTA      GTT      G    C              C    -GG       -TTC    ATCGTAACCTTGTCATAAGTAGTACTTATACGTTTCCCCGGTGTGTT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

No target gene.