Cti-MIR172a

Basic info.

• miRNA locus ID
• Cti-MIR172a

• miRNA locus accession
• PmiREN003329

• Organism
• Carthamus tinctorius

• Genomic location
• Cti-LUCG01183085.1  3010  3216  +

• Comments
• A member of family MIR172

• Confidence level
• 

Secondary strurture and sequence

CTTAC     C TC                          A    AAAGTT C    TTA TTA        -       GCTTTTATATTATGCACAATCTTTTAAA
     AGTCG T  TTGCTATTGCAGCATCATCAAGATTC CAAA      C ATCA   G   GGGTAATC GATCGAT                            
     ||||| |  |||||||||||||||||||||||||| ||||      | ||||   |   |||||||| |||||||                            G
     TCGGT A  AACGGTGACGTCGTAGTAGTTCTAAG GTTT      G TAGT   C   CCTATTGG CGGGAAT                            
  TAA     A TT                          A    ------ T    TGG -TG        T       CTAAACATTCTTCGCTCTAGCTATATTT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Expression info.

Pri-miRNA expression [+]

Mature miRNA expression [+]

Target gene info.[+]