Single miRNA

Cti-MIR171f

Basic info.

miRNA locus ID
Cti-MIR171f

miRNA locus accession
PmiREN003328

Organism
Carthamus tinctorius

Genomic location
Cti-LUCG01282281.1 10054 10174 -

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

   GATGG       G   T  C          C          GGGTTTAATG      TA
        AGAAATA ACA GG GTGGTATTGG TCGGTTCATC          TCTGTA  
        ||||||| ||| || |||||||||| ||||||||||          ||||||  T
        TCTTTGT TGT CT CACTATAACC AGCCGAGTAG          GGGTAT  
AAAGTGTT       A   T  -          A          ACATCTGATG      TA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

No target gene.