Single miRNA

Cti-MIR171d

Basic info.

miRNA locus ID
Cti-MIR171d

miRNA locus accession
PmiREN003326

Organism
Carthamus tinctorius

Genomic location
Cti-LUCG01268449.1 2729 2849 +

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  GGTATAACAATA     A                             T      TTTAG
              ATACG GATGTTGGTGCGGTTCAATCGGAAAGCAA GCTCTT     
              ||||| ||||||||||||||||||||||||||||| ||||||     G
              TATGC CTATAACCGTGCCGAGTTAGTTTTTTGTT TGAGAG     
ATCAATTTCATCAG     A                             C      CTTTG

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

No target gene.