Cti-MIR171c

Basic info.

• miRNA locus ID
• Cti-MIR171c

• miRNA locus accession
• PmiREN003325

• Organism
• Carthamus tinctorius

• Genomic location
• Cti-LUCG01263343.1  1515  1632  -

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

 GGAA      -T  A   A         T         A    C           ATAA
     GAGCAG  TG ACG GATATTGGT CGGTTCAAT AGAA GTAATGTTCAG    
     ||||||  || ||| ||||||||| ||||||||| |||| |||||||||||     
     TTCGTT  AC TGT CTATAACCG GCCGAGTTA TCTT CGTTGTAAGTT    
TGGTC      GT  G   A         T         G    T           GTGC

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Expression info.

Pri-miRNA expression [+]

Mature miRNA expression [+]

Target gene info.[+]