Single miRNA

Cti-MIR169o

Basic info.

miRNA locus ID
Cti-MIR169o

miRNA locus accession
PmiREN003319

Organism
Carthamus tinctorius

Genomic location
Cti-LUCG01255108.1 5352 5483 +

Comments
A member of family MIR169

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

             TAAT      T   -   C     -     T    CGTG     A  -T        AGGA
      AGAAGAG    CTTGTT GGT AGC AAGGA TGACT GCCT    TGAAC CA  CAAGTTGT    
      |||||||    |||||| ||| ||| ||||| ||||| ||||    ||||| ||  ||||||||    A
      TCTTCTC    GGACAG TCA TCG TTCCT ACTGA CGGA    GCTTG GT  GTTCAACG    
ACTCGT       ----      T   A   A     C     -    --TT     -  TT        ATAA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

No target gene.