Cti-MIR169l

Basic info.

• miRNA locus ID
• Cti-MIR169l

• miRNA locus accession
• PmiREN003316

• Organism
• Carthamus tinctorius

• Genomic location
• Cti-LUCG01191289.1  3300  3442  +

• Comments
• A member of family MIR169

• Confidence level
• 

Secondary strurture and sequence

      A      GTT     T  -     AA    GAC       -CT   TTA   -----    CC      TATATC
    GA AAGAGC   TTGTT AG TAGCC  GGAT   TTGCCAG   CCA   CGA     CTGA  GGTCCA      
    || ||||||   ||||| || |||||  ||||   |||||||   |||   |||     ||||  ||||||       
    CT TTCTCG   AACAA TC ATCGG  CCTA   AACGGTC   GGT   GCT     GACT  TTAGGT      
CTTT  C      ---     T  T     -A    -AC       TTT   -TG   TTCTA    --      CTCTCT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Expression info.

Pri-miRNA expression [+]

Mature miRNA expression [+]

Target gene info.[+]