Single miRNA

Cti-MIR169f

Basic info.

miRNA locus ID
Cti-MIR169f

miRNA locus accession
PmiREN003310

Organism
Carthamus tinctorius

Genomic location
Cti-LUCG01094534.1 3233 3364 +

Comments
A member of family MIR169

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

             TACT      T   -    A    -     T    TGT       CAT    T     GA
      AGAAGAG    CTTGTT AGT AGCC AGGA TGACT GCCT   GTGAACA   CAAG TGTTG  
      |||||||    |||||| ||| |||| |||| ||||| ||||   |||||||   |||| |||||  A
      TCTTCTC    GGACAG TCA TCGG TCCT ACTGA CGGA   TACTTGT   GTTC ACGAT  
ACTCGT       ----      T   A    A    C     -    --T       TTT    C     GA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

No target gene.