Single miRNA

Cti-MIR168c

Basic info.

miRNA locus ID
Cti-MIR168c

miRNA locus accession
PmiREN003304

Organism
Carthamus tinctorius

Genomic location
Cti-LUCG01292857.1 9112 9254 +

Comments
A member of family MIR168

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

TTTG            T        C          T     A    TT       ----C     ----   GGAG
    TCACTGTGGTTT CTGATTCG TTGGTACAGG CGGGA CGGT  TTCGCCG     CGATT    TCA    
    |||||||||||| |||||||| |||||||||| ||||| ||||  |||||||     |||||    |||     
    AGTGACGCCAAA GACTAAGT AACTATGTTC GCCCT GCTA  GAGTGGC     GCTAA    AGT    
 GTA            -        C          C     G    -T       TTATT     GAGA   AGAA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

No target gene.