Single miRNA

Cti-MIR168b

Basic info.

miRNA locus ID
Cti-MIR168b

miRNA locus accession
PmiREN003303

Organism
Carthamus tinctorius

Genomic location
Cti-LUCG01272159.1 3915 4031 +

Comments
A member of family MIR168

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

   TG             CT      C          T          TC    T A   TT
     TTATGGCGGTTTT  GATTCG TTGGTGCAGG CGGGAACGGC  GATT C CAT  
     |||||||||||||  |||||| |||||||||| ||||||||||  |||| | |||   
     AATGTCGCCAAAG  CTAAGT AACTACGTTC GTTCTTGTCG  TTAA G GTA  
TAGTA             -T      C          C          --    C -   TG

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

No target gene.