Single miRNA

Cti-MIR166g

Basic info.

miRNA locus ID
Cti-MIR166g

miRNA locus accession
PmiREN003298

Organism
Carthamus tinctorius

Genomic location
Cti-LUCG01218390.1 1227 1328 +

Comments
A member of family MIR166

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

 AAA    -T G       T             AG  A          TGGG
    GAAA  G GGTTGTT GGAATGAAGTTTG  CC AGATCCTTTG    
    ||||  | ||||||| |||||||||||||  || ||||||||||     
    CTTT  T TCAACAG TCTTACTTCGGAC  GG TCTAGGGAGC    
ATAG    TC G       T             CA  C          TCTT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

No target gene.