Cti-MIR166a

Basic info.

• miRNA locus ID
• Cti-MIR166a

• miRNA locus accession
• PmiREN003292

• Organism
• Carthamus tinctorius

• Genomic location
• Cti-LUCG01077506.1  780  984  -

• Comments
• A member of family MIR166

• Confidence level
• 

Secondary strurture and sequence

  AATTAAGTAAT      T        TT G    C      CAT       TTCTTTC   T       A    CA         ---------TAC          AT
             GGTTTG GGGGGATG  G CTGG TCGATG   TCATCTT       TGC TAAATAA TTTG  GGAGAGACA            ATATATGTAT  
             |||||| ||||||||  | |||| ||||||   |||||||       ||| ||||||| ||||  |||||||||            ||||||||||   
             CCAAAC CTCCTTAC  C GACC GGCTAC   AGTAGAA       ATG GTTTGTT GAAC  TCTCTCTGT            TATATACATA  
TTATTCTTTCACC      T        TT G    A      AGC       ----TTA   T       -    -A         TCAATTAACTAA          TA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Expression info.

Pri-miRNA expression [+]

Mature miRNA expression [+]

Target gene info.[+]