Single miRNA

Cti-MIR164b

Basic info.

miRNA locus ID
Cti-MIR164b

miRNA locus accession
PmiREN003289

Organism
Carthamus tinctorius

Genomic location
Cti-LUCG01111945.1 5217 5355 +

Comments
A member of family MIR164

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

GATAT      T   -   T         A C             CTGTTAA     ---      TTCCTATTGT
     AGGTGA CGA TCT TGTTGGAGA G AGGGTACGTGCAA       AAACC   GTCGAC          
     |||||| ||| ||| ||||||||| | |||||||||||||       |||||   ||||||           
     TCCACT GTT AGA GCAACCTCT C TCTCGTGCACGTT       TTTGG   TAGTTG          
   TT      C   T   T         C C             ------A     GTA      TTGTTGTTGT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

No target gene.