Single miRNA

Cti-MIR157c

Basic info.

miRNA locus ID
Cti-MIR157c

miRNA locus accession
PmiREN003281

Organism
Carthamus tinctorius

Genomic location
Cti-LUCG01204475.1 1934 2058 -

Comments
A member of family MIR157

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

         A  AGTG       TGTTGC         -              T  TG   T    ACTAT
          GC    GCGGTGA      TGACAGAAG ATAGAGAGCACAGA GA  GAG TGCA     
          ||    |||||||      ||||||||| |||||||||||||| ||  ||| ||||      
          CG    CGCTACT      ACTGTCTTC TATCTCTCGTGTTT CT  TTC ACGT     
TCCGTTTCCT  -ATG       ------         G              C  TG   T    GCAGT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

No target gene.