Single miRNA

Cti-MIR156l

Basic info.

miRNA locus ID
Cti-MIR156l

miRNA locus accession
PmiREN003278

Organism
Carthamus tinctorius

Genomic location
Cti-LUCG01223920.1 4345 4477 +

Comments
A member of family MIR156

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

GTATAGAAGAA   AAAGAA         -      -             ------A     T       AA
           GAG      AGCTGACAG AAGAGA GTGAGCATATGCA       AGCAA TGTATAG  
           |||      ||||||||| |||||| |||||||||||||       ||||| |||||||  A
           CTC      TCGACTGTC TTCTCT CACTCGTGTGCGT       TTGTT ACATATC  
 TCTCCCACCA   ---CCA         G      T             ATTAAGG     T       AA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

No target gene.