Single miRNA

Cti-MIR156h

Basic info.

miRNA locus ID
Cti-MIR156h

miRNA locus accession
PmiREN003274

Organism
Carthamus tinctorius

Genomic location
Cti-LUCG01298205.1 1314 1579 +

Comments
A member of family MIR156

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

CAAGATGTCTGTGACGGTGATGA    A      A  G  CA     CGATTGCA        T   ACCGAGCTGCCGCCGGTGGCGGGTATCCGTCACAAAACAGCTTGTCGTAGCTGCCGCTCGCCTCGAAGTTA
                       TGAC GAAGAG GA AG  CAGTC        CCACCGGC GCA                                                                       
                       |||| |||||| || ||  |||||        |||||||| |||                                                                        
                       ACTG CTTTTC TT TT  GTCGG        AGGTTTTG TCG                                                                       
                    TCG    G      G  G  AA     -----AGA        -   CCCAGCGTGGAGTTTGAGTTGGTGCGCTGGAGTGGAGGCTTTCAAACAGTCGTCGTCGTCGTCGGCCACGA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

No target gene.