Single miRNA

Cti-MIR156g

Basic info.

miRNA locus ID
Cti-MIR156g

miRNA locus accession
PmiREN003273

Organism
Carthamus tinctorius

Genomic location
Cti-LUCG01268168.1 1012 1137 +

Comments
A member of family MIR156

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

 GATGGATGGATGTAT   -         -   GA        A A       A      CAAAT
                AGA GCTGACAGA AGA  GTGAGCAC C AAGGCAA TTGTAC     
                ||| ||||||||| |||  |||||||| | ||||||| ||||||     T
                TCT CGACTGTCT TCT  TACTCGTG G TTTTGTT AGTATG     
TTATTATTCATTTTCT   T         A   AG        - G       -      TTGTG

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

No target gene.